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- StreetPass Mii Plaza
- Sonic Generations: Ao no Bouken
- Super Mario Land 2: 6 Golden Coins
- Sakura Samurai: Art of the Sword
- Steel Diver: Sub Wars
- Sonic: Lost World
- Super Street Fighter IV: 3D Edition
- Stella Glow
- Sonic Generations
- Senran Kagura Burst
- Spy Hunter
- Story of Seasons
- Sengoku Musou Chronicle 3
- Senran Kagura 2: Shinku
- Sonic Boom: Shattered Crystal
- Super Mario Land
- Super Pokemon Rumble
- SteamWorld Dig
- Super Smash Bros. for Nintendo 3DS
- Super Mario 3D Land
- Swords & Darkness
- Shin Megami Tensei: Devil Survivor 2 Record Breaker
- Scooby-Doo! & Looney Tunes Cartoon Universe: Adventure
- SpeedX 3D: Hyper Edition
- Shovel Knight: Treasure Trove
- SD Gundam G Generation 3D
- Super Monkey Ball 3D
- Shin Megami Tensei: Devil Summoner – Soul Hackers
- Style Savvy: Styling Star
- Skylanders Giants
- Shin Megami Tensei: Strange Journey Redux
- Senran Kagura 2: Deep Crimson
- Style Savvy: Trendsetters
- Shantae and the Pirate’s Curse
- Samurai Warriors Chronicles
- Super Robot Taisen UX
- Sonic Boom: Fire & Ice
- Shin Megami Tensei IV: Apocalypse
- Super Mario Bros. Deluxe
- Super Mario Bros. 3
- Street Fighter II
- Shin Megami Tensei: Devil Survivor Overclocked
- Senran Kagura Burst: Guren no Shoujotachi
- Star Fox 64 3D
- Super Mario Bros.: The Lost Levels
- Super Mario Maker for Nintendo 3DS
- Super Mario Bros. 2
- Super Mario Land 3: Wario Land
- Slime MoriMori Dragon Quest 3: Daikaizoku to Shippo Dan
- Super Mario Bros.
- Shinobi
- Samurai Warriors Chronicles 3
- Surechigai Mii Hiroba
- Shin Megami Tensei IV
- Shinobi 3D
- Story of Seasons: Trio of Towns
Popular Nintendo 3DS
- Yo-Kai Watch
- Pocket Monsters Moon
- Metal Fight Beyblade: 4D x Zero-G Ultimate Tournament
- Mario Kart 7
- Shin Megami Tensei IV
- Yo-kai Watch 2: Psychic Specters
- Pokemon Crystal Version
- Ninja Jajamaru-kun: Sakura-hime to Karyu no Himitsu
- Metroid
- Zelda no Densetsu: Toki no Ocarina 3D
- Centipede: Infestation
- Professor Layton and the Azran Legacy
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