The following are known Game Genie Codes for Top Gun: The Second Mission on Nintendo Entertainment System (NES).

• Infinite Lives
  SZVYLIVG
• Start With 1 Life
  PASYALLA
• Start With 6 Lives
  TASYALLA
• Start With 9 Lives
  PASYALLE
• Infinite Missiles (1-Player Game)
  AAKEUYPA
• Infinite Missiles (2-Player Game)
  AENAZIPA
• 60 Phoenix Missiles (1-Player Game)
  KUVZTIKO
• 20 Phoenix Missiles (2-Player Game)
  KOVXTISA